STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MlaDHypothetical protein; COG: COG1463; Pfam: PF02470; InterPro: IPR003399. (183 aa)    
Predicted Functional Partners:
MlaE_1
Hypothetical protein; COG: COG0767; Pfam: PF02405; InterPro: IPR003453.
 
 0.999
ttg2A
ABC transporter, ATP-binding protein; COG: COG1127; Pfam: PF00005; InterPro: IPR003593.
 
 0.998
ttg2D
Toluene tolerance protein Ttg2D; COG: COG2854; Pfam: PF05494; InterPro: IPR008869.
 
 0.996
MlaB
STAS domain protein; COG: COG3113; Pfam: PF01740.
  
 0.972
vacJ
VacJ-like protein; COG: COG2853; Pfam: PF04333; InterPro: IPR007428.
 
   
 0.810
EFE96429.1
Hypothetical protein.
       0.712
yrbA
BolA-like protein; COG: COG5007; Pfam: PF01722; InterPro: IPR002634; Belongs to the BolA/IbaG family.
     
 0.557
motB
OmpA family protein; COG: COG1360; Pfam: PF00691; InterPro: IPR006665.
 
 
   0.553
YrbG
K+-dependent Na+/Ca+ exchanger family protein; COG: COG0530; Pfam: PF01699; InterPro: IPR004481.
       0.540
bpp
Type VI secretion system OmpA/MotB family protein; COG: COG3455; Pfam: PF00691; InterPro: IPR006665.
   
   0.495
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.