STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttg2DToluene tolerance protein Ttg2D; COG: COG2854; Pfam: PF05494; InterPro: IPR008869. (209 aa)    
Predicted Functional Partners:
MlaD
Hypothetical protein; COG: COG1463; Pfam: PF02470; InterPro: IPR003399.
 
 0.996
MlaB
STAS domain protein; COG: COG3113; Pfam: PF01740.
 
 
 0.987
MlaE_1
Hypothetical protein; COG: COG0767; Pfam: PF02405; InterPro: IPR003453.
 
 
 0.977
ttg2A
ABC transporter, ATP-binding protein; COG: COG1127; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.973
vacJ
VacJ-like protein; COG: COG2853; Pfam: PF04333; InterPro: IPR007428.
 
 
 
 0.874
lptC
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
 
    0.749
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.690
EFE96429.1
Hypothetical protein.
       0.679
yfcN
Smr domain protein; COG: COG2840; Pfam: PF01713; InterPro: IPR002625; Belongs to the UPF0115 family.
  
     0.639
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
 
  
 0.605
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.