STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yraNTIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. (130 aa)    
Predicted Functional Partners:
lpoA
LppC; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1A (PBP1a). Belongs to the LpoA family.
 
   
 0.840
diaA
DnaA initiator-associating protein DiaA; Required for the timely initiation of chromosomal replication via direct interactions with the DnaA initiator protein. Belongs to the SIS family. DiaA subfamily.
  
  
 0.718
comF
comF family protein; COG: COG1040; Pfam: PF00156.
 
    0.695
OsmY_3
Phospholipid-binding domain protein; COG: COG2823; Pfam: PF04972; InterPro: IPR007055.
     
 0.617
yraL
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.584
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
  
    0.567
dprA
DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488.
 
    0.563
comM
Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482.
 
  
 0.525
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
   
 0.404
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.