STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mviMOxidoreductase, NAD-binding domain protein; COG: COG0673; Pfam: PF01408; InterPro: IPR016040. (340 aa)    
Predicted Functional Partners:
guaA
Class I glutamine amidotransferase; COG: COG0518; Pfam: PF00117; InterPro: IPR000991.
  
    0.784
EFE96480.1
Hypothetical protein; COG: COG1451; Pfam: PF01863.
       0.745
ygjO
Methyltransferase small domain protein; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
 
     0.578
lysS
lysine--tRNA ligase; COG: COG1190; Pfam: PF01336,PF00152; InterPro: IPR002313; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.545
alx
Integral membrane protein, TerC family; COG: COG0861; Pfam: PF03741; InterPro: IPR005496.
       0.427
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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