STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadHPyridine nucleotide-disulfide oxidoreductase; COG: COG1902; Pfam: PF00724,PF07992,PF00070; InterPro: IPR013785. (677 aa)    
Predicted Functional Partners:
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
  
 
 0.999
GltB_2
Glutamate synthase domain protein; COG: COG0069; Pfam: PF01645; InterPro: IPR002932; Belongs to the glutamate synthase family.
  
 
 0.902
Fre
FMN reductase; COG: COG0543; Pfam: PF00970,PF00175; InterPro: IPR001433.
  
 
 0.823
fadB
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.804
hcr
2Fe-2S iron-sulfur cluster binding domain protein; COG: COG1018; Pfam: PF00970,PF00175,PF00111; InterPro: IPR001041.
  
 0.733
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit; COG: COG1018; Pfam: PF00970,PF00175,PF00111; InterPro: IPR011884.
  
 0.726
fadJ
Fatty oxidation complex, alpha subunit FadJ; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.715
EFE95393.1
Pyridoxamine 5'-phosphate oxidase family protein; COG: COG3576; Pfam: PF01243; InterPro: IPR011576.
  
 0.715
narH
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547; overlaps another CDS with the same product name.
    
 
 0.696
narH-2
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547.
    
 
 0.696
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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