STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TyrP_1Transmembrane amino acid transporter protein; COG: COG0814; Pfam: PF01490. (413 aa)    
Predicted Functional Partners:
EFE98263.1
Hypothetical protein.
  
     0.710
EFE98251.1
Hypothetical protein; COG: COG2378; Pfam: PF00392.
  
     0.643
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
  
 
 0.626
gabD2
Succinate-semialdehyde dehydrogenase; COG: COG1012; Pfam: PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
  
  
 0.612
gabT
4-aminobutyrate transaminase; COG: COG0160; Pfam: PF00202; InterPro: IPR004632; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.606
EFE98306.1
Hypothetical protein.
  
     0.558
EFE98262.1
DNA-binding helix-turn-helix protein; COG: COG2932; Pfam: PF01381,PF00717; InterPro: IPR001387.
  
     0.534
EFE98301.1
Site-specific recombinase, phage integrase family; Pfam: PF00589; InterPro: IPR013762.
  
     0.532
tnaB
Aromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091.
 
     0.498
EFE98213.1
Hypothetical protein.
  
     0.474
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.