STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WapA_2RHS repeat-associated core domain protein; COG: COG3209; Pfam: PF05593,PF03527. (1370 aa)    
Predicted Functional Partners:
EFE96496.1
Hypothetical protein.
       0.773
EFE96492.1
Rhs element Vgr protein; COG: COG3501; Pfam: PF04524,PF06715; InterPro: IPR006533.
 
  
 0.689
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
   
    0.652
EFE94009.1
Hypothetical protein.
 
    0.620
EFE94158.1
Hypothetical protein.
  
  
 0.610
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
  
    0.598
EFE94024.1
Hypothetical protein.
  
     0.541
EFE96493.1
Hypothetical protein.
  
    0.525
EFE95116.1
Type VI secretion-associated protein, BMA_A0400 family.
  
    0.469
bpp
Type VI secretion system OmpA/MotB family protein; COG: COG3455; Pfam: PF00691; InterPro: IPR006665.
 
    0.451
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.