STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YqiCHypothetical protein; COG: COG2960; Pfam: PF04380; InterPro: IPR007475. (89 aa)    
Predicted Functional Partners:
smg
Hypothetical protein; COG: COG2922; Pfam: PF04361; InterPro: IPR007456; Belongs to the Smg family.
  
     0.697
ftsQ
Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
  
     0.599
smtA
Methyltransferase domain protein; COG: COG0500; Pfam: PF08241.
  
     0.566
EFE96776.1
SCP-2 sterol transfer family protein; COG: COG3165; Pfam: PF06843; InterPro: IPR010668.
  
   
 0.566
RatB
Hypothetical protein; COG: COG2914; Pfam: PF03658; InterPro: IPR005346; Belongs to the UPF0125 (RnfH) family.
  
     0.531
sspB
Stringent starvation protein B; COG: COG2969; Pfam: PF04386; InterPro: IPR007481.
  
     0.506
rseB
MucB/RseB family protein; COG: COG3026; Pfam: PF03888; InterPro: IPR005588.
  
     0.502
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.499
bioH
Carboxylesterase BioH; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
  
     0.482
ftsB
Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.461
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.