STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiDAromatic ring-opening dioxygenase, catalytic subunit LigB; COG: COG3384; Pfam: PF02900; InterPro: IPR004183. (255 aa)    
Predicted Functional Partners:
YhhW_2
Pirin family protein; COG: COG1741; Pfam: PF02678,PF05726; InterPro: IPR012093; Belongs to the pirin family.
 
  
 0.709
yhhW
Pirin family protein; COG: COG1741; Pfam: PF02678; InterPro: IPR012093; Belongs to the pirin family.
 
  
 0.671
EFE98233.1
Pirin family protein; COG: COG1741; Pfam: PF02678,PF05726; InterPro: IPR012093; Belongs to the pirin family.
 
  
 0.665
yhaK
Pirin family protein; COG: COG1741; Pfam: PF02678; InterPro: IPR012093; Belongs to the pirin family.
 
  
 0.525
ygiE
Metal cation transporter, ZIP family; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
       0.478
hpaH
2-oxo-hepta-3-ene-1,7-dioic acid hydratase; COG: COG3971; Pfam: PF01689; InterPro: IPR012690.
  
  
 0.454
hpcD
5-carboxymethyl-2-hydroxymuconate delta isomerase; COG: COG3232; Pfam: PF02962; InterPro: IPR014347.
  
  
 0.453
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.401
sseA
Rhodanese-like protein; COG: COG2897; Pfam: PF00581; InterPro: IPR001763.
 
    
 0.401
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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