STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhaRSigma-54 interaction domain protein; Pfam: PF01590,PF00989,PF00158,PF02954; InterPro: IPR002078. (647 aa)    
Predicted Functional Partners:
dhaK
Dihydroxyacetone kinase, DhaK subunit; COG: COG2376; Pfam: PF02733; InterPro: IPR012736.
  
 
 
 0.890
dhaL
Dihydroxyacetone kinase, L subunit; COG: COG2376; Pfam: PF02734; InterPro: IPR012737.
 
 
 
 0.876
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.782
levR
Sigma-54 interaction domain protein; Pfam: PF00158,PF00874; InterPro: IPR002078.
  
     0.611
dhaM
Dihydroxyacetone kinase, phosphotransfer subunit; COG: COG3412; Pfam: PF03610,PF00381,PF05524,PF00391; InterPro: IPR012844; Belongs to the PEP-utilizing enzyme family.
 
   
 0.524
tolC
Type I secretion outer membrane protein, TolC family; COG: COG1538; Pfam: PF02321; InterPro: IPR010130.
       0.486
gutM
Glucitol operon activator protein GutM; COG: COG4578; Pfam: PF06923; InterPro: IPR009693.
  
     0.420
acpS
Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
  
    0.401
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.