STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96528.1Hypothetical protein; COG: COG3151; Pfam: PF06853; InterPro: IPR009659. (141 aa)    
Predicted Functional Partners:
nudF
ADP-ribose pyrophosphatase; COG: COG0494; Pfam: PF00293; InterPro: IPR000086.
  
    0.854
algQ
Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase.
  
     0.666
YibL
Hypothetical protein.
  
     0.638
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.634
EFE96942.1
Hypothetical protein; COG: COG3159; Pfam: PF04340; InterPro: IPR007435.
  
     0.633
YgdR_2
Hypothetical protein; Pfam: PF06004; InterPro: IPR010305.
  
     0.612
BhsA_1
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.601
bhsA
Multiple stress resistance protein BhsA; Pfam: PF07338; InterPro: IPR010854.
  
     0.581
EFE96530.1
Hypothetical protein; COG: COG3150; Pfam: PF05728; InterPro: IPR008886.
 
     0.576
BhsA_3
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.556
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.