STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96537.1Hypothetical protein; COG: COG0524; Pfam: PF00294. (311 aa)    
Predicted Functional Partners:
EFE94053.1
ADP-ribosylglycohydrolase; COG: COG1397; Pfam: PF03747; InterPro: IPR005502.
 
   
 0.785
EFE98118.1
ADP-ribosylglycohydrolase; Pfam: PF03747; InterPro: IPR005502.
 
   
 0.736
rfaL
O-antigen ligase; Pfam: PF04932.
  
   
 0.613
EFE96538.1
Putative radical SAM protein YgiQ; COG: COG1032; Pfam: PF08497,PF04055; InterPro: IPR013704.
       0.566
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.549
fucP-2
L-fucose:H+ symporter permease; COG: COG0738; Pfam: PF07690; InterPro: IPR005275.
 
     0.529
agp
Histidine acid phosphatase; Pfam: PF00328; InterPro: IPR000560.
  
     0.524
EFE94334.1
Fusaric acid resistance protein conserved region; COG: COG1289; Pfam: PF04632; InterPro: IPR006726.
  
     0.475
ptsP
Phosphoenolpyruvate-protein phosphotransferase; COG: COG1080; Pfam: PF00381,PF05524,PF00391,PF02896,PF00359; InterPro: IPR006318.
 
  
 0.474
EFE93633.1
Hypothetical protein.
 
    0.463
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.