STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfsANitroreductase family protein; COG: COG0778; Pfam: PF00881; InterPro: IPR000415; Belongs to the flavin oxidoreductase frp family. (246 aa)    
Predicted Functional Partners:
hpaC
4-hydroxyphenylacetate 3-monooxygenase, reductase component; COG: COG1853; Pfam: PF01613; InterPro: IPR002563.
  
 
 0.911
C1-hpah
Flavin reductase-like protein; COG: COG1853; Pfam: PF01613; InterPro: IPR012349.
  
 
 0.911
ribF
Riboflavin biosynthesis protein RibF; COG: COG0196; Pfam: PF06574,PF01687; InterPro: IPR002606; Belongs to the ribF family.
    
 0.910
ssuE
FMN reductase; COG: COG0431; Pfam: PF03358; InterPro: IPR005025.
    
 0.908
phyM
Histidine acid phosphatase; Pfam: PF00328; InterPro: IPR000560.
    
  0.902
yigB
HAD hydrolase, family IA, variant 1; COG: COG1011; Pfam: PF00702; InterPro: IPR005834.
     
  0.900
yqhD
Alcohol dehydrogenase, iron-dependent; COG: COG1979; Pfam: PF00465; InterPro: IPR001670.
  
    0.787
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.672
EFE93552.1
YcaO-like family; COG: COG1944; Pfam: PF02624; InterPro: IPR003776.
  
  
 0.624
EFE93609.1
Hypothetical protein; Pfam: PF07214; InterPro: IPR010815.
  
  
 0.588
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.