Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nfsANitroreductase family protein; COG: COG0778; Pfam: PF00881; InterPro: IPR000415; Belongs to the flavin oxidoreductase frp family. (246 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; COG: COG0196; Pfam: PF06574,PF01687; InterPro: IPR002606; Belongs to the ribF family.
    
 0.913
hpaC
4-hydroxyphenylacetate 3-monooxygenase, reductase component; COG: COG1853; Pfam: PF01613; InterPro: IPR002563.
  
 
 0.910
C1-hpah
Flavin reductase-like protein; COG: COG1853; Pfam: PF01613; InterPro: IPR012349.
  
 
 0.910
ssuE
FMN reductase; COG: COG0431; Pfam: PF03358; InterPro: IPR005025.
     
 0.906
phyM
Histidine acid phosphatase; Pfam: PF00328; InterPro: IPR000560.
    
  0.902
yigB
HAD hydrolase, family IA, variant 1; COG: COG1011; Pfam: PF00702; InterPro: IPR005834.
     
  0.900
ubiX
Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
     
  0.900
yqhD
Alcohol dehydrogenase, iron-dependent; COG: COG1979; Pfam: PF00465; InterPro: IPR001670.
  
    0.786
EFE93609.1
Hypothetical protein; Pfam: PF07214; InterPro: IPR010815.
  
  
 0.650
EFE93552.1
YcaO-like family; COG: COG1944; Pfam: PF02624; InterPro: IPR003776.
  
  
 0.636
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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