STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ScrYHypothetical protein. (469 aa)    
Predicted Functional Partners:
LamB_2
Hypothetical protein; Pfam: PF02264; InterPro: IPR003192.
  
   
 0.778
EFE93451.1
Outer membrane porin, OprD family; Pfam: PF03573.
  
   
 0.684
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
   
 0.679
vmtV2
Bacterial group 2 Ig-like protein; COG: COG5492; Pfam: PF02368; InterPro: IPR003343.
  
     0.678
scrR
D-fructose-responsive transcription factor; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR012781.
 
     0.651
Eae
Hypothetical protein.
  
     0.637
scrK-2
Fructokinase; COG: COG0524; Pfam: PF00294; InterPro: IPR011611; Belongs to the carbohydrate kinase PfkB family.
 
     0.635
scrA
PTS system sucrose-specific IIBC component; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR010973.
 
     0.633
EFE95968.1
Hypothetical protein.
  
     0.565
EFE96610.1
Phage tail tape measure protein, lambda family; COG: COG5281; Pfam: PF06791; InterPro: IPR006431.
  
     0.498
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.