STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SoxS_1Transcriptional regulator, AraC family; COG: COG4977; Pfam: PF01965,PF00165; InterPro: IPR002818. (355 aa)    
Predicted Functional Partners:
pncA
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
 
    0.720
RhaS_7
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
     0.559
araC3
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287.
  
 
 0.478
AdaA_2
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
 
 0.478
AlkA
AlkA N-terminal domain protein; COG: COG0122; Pfam: PF02805,PF00165,PF06029,PF00730; InterPro: IPR003265.
  
    0.465
msmR
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
 
 0.438
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
 
 0.427
FecI
Sigma-70 region 2; COG: COG1595; Pfam: PF04542,PF08281; InterPro: IPR014284; Belongs to the sigma-70 factor family.
  
  
 0.417
yhiN
Flavoprotein family protein; COG: COG2081; Pfam: PF03486; InterPro: IPR004792.
 
      0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.