Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SoxS_1Transcriptional regulator, AraC family; COG: COG4977; Pfam: PF01965,PF00165; InterPro: IPR002818. (355 aa)    
Predicted Functional Partners:
pncA
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
 
    0.685
RhaS_7
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
     0.559
araC3
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287.
  
   0.478
AdaA_2
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
   0.478
AlkA
AlkA N-terminal domain protein; COG: COG0122; Pfam: PF02805,PF00165,PF06029,PF00730; InterPro: IPR003265.
  
  
 0.471
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
    0.461
msmR
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
   0.438
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
   0.427
yhiN
Flavoprotein family protein; COG: COG2081; Pfam: PF03486; InterPro: IPR004792.
 
      0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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