Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SinRDNA-binding helix-turn-helix protein; Pfam: PF01381,PF07883; InterPro: IPR014710. (200 aa)    
Predicted Functional Partners:
EFE96577.1
B3/4 domain protein; COG: COG3382; Pfam: PF03483.
 
    0.863
PuuR_5
DNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR001387.
  
    0.646
puuR
HTH-type transcriptional regulator PuuR; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
 
 
 0.497
puuR-2
HTH-type transcriptional regulator PuuR; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
 
 
 0.495
pheA
Chorismate mutase; COG: COG0077; Pfam: PF01817,PF00800; InterPro: IPR001086.
  
  
 0.458
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
  
 0.453
cobB
Transcriptional regulator, Sir2 family; COG: COG0846; Pfam: PF02146; InterPro: IPR003000; Belongs to the sirtuin family. Class III subfamily.
  
    0.430
farR
UbiC transcription regulator-associated domain protein; COG: COG2188; Pfam: PF00392,PF07702; InterPro: IPR011663.
  
  
 0.425
phnF
Phosphonate metabolism transcriptional regulator PhnF; COG: COG2188; Pfam: PF00392,PF07702; InterPro: IPR012702.
  
  
 0.425
LysN_2
Aminotransferase, class I/II; COG: COG1167; Pfam: PF00155; InterPro: IPR004839.
  
  
 0.425
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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