STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SinRDNA-binding helix-turn-helix protein; Pfam: PF01381,PF07883; InterPro: IPR014710. (200 aa)    
Predicted Functional Partners:
EFE96577.1
B3/4 domain protein; COG: COG3382; Pfam: PF03483.
 
    0.861
PuuR_5
DNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR001387.
  
    0.646
puuR
HTH-type transcriptional regulator PuuR; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
 
 
 0.493
puuR-2
HTH-type transcriptional regulator PuuR; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
 
 
 0.491
guaA-2
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.486
BvgS_2
PAS domain S-box protein; COG: COG0642; Pfam: PF08448,PF00512,PF02518,PF00072; InterPro: IPR003594.
  
  
 0.426
arcB
PAS domain S-box protein; COG: COG0642; Pfam: PF00989,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
     
 0.407
evgS
Response regulator receiver domain protein; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR001638.
  
  
 0.402
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
  
 0.402
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.