STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96585.1Hypothetical protein; COG: COG4117; 1.2.1.2. (203 aa)    
Predicted Functional Partners:
YedY_2
Oxidoreductase molybdopterin binding domain protein; COG: COG2041; Pfam: PF00174; InterPro: IPR000572.
 
    0.946
EFE96583.1
Pentapeptide MXKDX repeat protein; InterPro: IPR014299.
 
     0.902
YedY_3
Oxidoreductase molybdopterin binding domain protein; COG: COG2041; Pfam: PF00174; InterPro: IPR000572.
 
    0.780
TcrY
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00672,PF00512,PF02518; InterPro: IPR003594.
 
     0.752
resD
Response regulator receiver domain protein; COG: COG0745; Pfam: PF00072,PF00486; InterPro: IPR001789.
 
     0.617
EFE94940.1
Hypothetical protein.
  
     0.513
EFE97985.1
Hypothetical protein; COG: COG1942; Pfam: PF01361; Belongs to the 4-oxalocrotonate tautomerase family.
  
     0.462
EFE93757.1
Transcriptional regulator, LuxR family; Pfam: PF00196.
  
     0.444
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.