STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AilPutative attachment invasion locus protein; COG: COG3637; Pfam: PF06316; InterPro: IPR000758. (231 aa)    
Predicted Functional Partners:
dapX
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.806
EFE96912.1
Hypothetical protein; Overlaps another CDS with the same product name; 3.6.1.-.
  
     0.774
EFE94171.1
Hypothetical protein.
  
     0.774
EFE97000.1
Hypothetical protein; COG: COG5645; Pfam: PF07119; InterPro: IPR010780.
  
     0.773
EFE96589.1
Hypothetical protein.
       0.773
holE
DNA polymerase III subunit theta; Pfam: PF06440; InterPro: IPR011325.
  
     0.773
YdgH_3
Hypothetical protein; Pfam: PF07338.
  
     0.773
atpI
ATP synthase F0, I subunit; COG: COG3312; Pfam: PF03899; InterPro: IPR005598.
  
     0.772
EFE97598.1
Hypothetical protein.
  
     0.770
EFE96463.1
Hypothetical protein.
  
     0.770
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.