STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96316.1PepSY domain protein; COG: COG3182; Pfam: PF03929. (430 aa)    
Predicted Functional Partners:
GbpA_1
Chitin binding domain protein; COG: COG3397; Pfam: PF03067; InterPro: IPR004302.
 
     0.647
copC
Copper resistance protein CopC; COG: COG2372; Pfam: PF04234; InterPro: IPR007348.
  
    0.564
IucD
Hypothetical protein; COG: COG3486; 1.14.13.59.
 
    0.483
cah-2
Carbonate dehydratase; COG: COG0288; Pfam: PF00484; InterPro: IPR001765.
       0.464
GsiB_2
ABC transporter, substrate-binding protein, family 5; Pfam: PF00496; InterPro: IPR000914.
  
     0.434
chb
Chitin binding domain protein; COG: COG3397; Pfam: PF03067; InterPro: IPR004302.
  
     0.431
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.