STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GbpA_1Chitin binding domain protein; COG: COG3397; Pfam: PF03067; InterPro: IPR004302. (472 aa)    
Predicted Functional Partners:
chiC
Chitinase C1; COG: COG3469; Pfam: PF00704,PF00041,PF02839; InterPro: IPR001223; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.897
traE
Type IV conjugative transfer system protein TraE; Pfam: PF05309; InterPro: IPR007973.
  
     0.649
EFE96316.1
PepSY domain protein; COG: COG3182; Pfam: PF03929.
 
     0.647
traG
TraG-like protein, domain protein; Pfam: PF07916; InterPro: IPR012931.
  
     0.617
trbC
type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113.
  
     0.602
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
  
   
 0.600
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
  
     0.528
traB
Tat pathway signal sequence domain protein; Pfam: PF06447; InterPro: IPR010501.
  
     0.513
pilT
Transglycosylase SLT domain protein; COG: COG0741; Pfam: PF01464; InterPro: IPR008258.
  
     0.492
EFE94226.1
Hypothetical protein.
  
     0.490
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.