STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG6Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG4221; Pfam: PF00106; InterPro: IPR002198; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (194 aa)    
Predicted Functional Partners:
EFE96321.1
Hypothetical protein.
       0.714
YciK
Hypothetical protein; COG: COG1028; Pfam: PF00106; InterPro: IPR002198.
  
    0.651
entF
AMP-binding enzyme; COG: COG1020; Pfam: PF00668,PF00501,PF00550,PF00975; InterPro: IPR010071.
 
  
 0.636
EFE97181.1
Hypothetical protein; COG: COG4221; InterPro: IPR002198.
  
     0.624
adh2
GroES-like protein; COG: COG1064; Pfam: PF08240,PF00107; InterPro: IPR002085.
  
  
 0.580
FabG_9
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
  
    0.540
RhaS_3
Transcriptional regulator AraC N-terminal domain protein; COG: COG2207; Pfam: PF06719,PF00165; InterPro: IPR009594.
       0.525
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.