STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96278.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
WapA_3
RHS repeat-associated core domain protein; COG: COG3209; Pfam: PF05488,PF05593,PF03527; InterPro: IPR001826.
       0.752
EFE96276.1
Hypothetical protein; Pfam: PF08786; InterPro: IPR014894.
       0.726
EFE96279.1
Integrating conjugative element protein, PFL_4709 family; Pfam: PF07511; InterPro: IPR011090.
       0.526
EFE96280.1
Integrating conjugative element protein, PFL_4710 family; Pfam: PF07513; InterPro: IPR011092.
       0.526
EFE96281.1
Integrating conjugative element protein, PFL_4711 family.
       0.525
EFE96282.1
Hypothetical protein.
       0.503
EFE96283.1
Hypothetical protein.
       0.503
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.