STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
endANuclease, EndA/NucM family; COG: COG2356; Pfam: PF04231; InterPro: IPR007346. (231 aa)    
Predicted Functional Partners:
sprT
Metallopeptidase, SprT family; COG: COG3091; Pfam: PF03926; InterPro: IPR006640; Belongs to the SprT family.
     
 0.637
rsmE
16S rRNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.586
gshB
Glutathione synthase; COG: COG0189; Pfam: PF02951,PF02955; InterPro: IPR006284; Belongs to the prokaryotic GSH synthase family.
       0.564
algH
Putative ACR, COG1678; COG: COG1678; Pfam: PF02622; InterPro: IPR003774; Belongs to the UPF0301 (AlgH) family.
       0.417
yqgF
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.415
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.