STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NdhLTat pathway signal sequence domain protein; COG: COG1529; Pfam: PF02738; InterPro: IPR008274. (929 aa)    
Predicted Functional Partners:
HcrC_1
2Fe-2S iron-sulfur cluster-binding domain protein; COG: COG2080; Pfam: PF00111,PF01799; InterPro: IPR002888.
 
 
 0.996
EFE96192.1
Putative xanthine dehydrogenase accessory factor; COG: COG1975; Pfam: PF02625; InterPro: IPR003777.
 
  
 0.897
EFE96196.1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
  
 0.893
iorA2
2Fe-2S iron-sulfur cluster-binding domain protein; COG: COG2080; Pfam: PF00111,PF01799; InterPro: IPR012675.
 
 0.886
iorA
2Fe-2S iron-sulfur cluster-binding domain protein; COG: COG2080; Pfam: PF00111,PF01799; InterPro: IPR002888.
 
 0.874
EFE96193.1
Hypothetical protein.
 
   
 0.814
xdhA
Xanthine dehydrogenase, small subunit; COG: COG4630; Pfam: PF00111,PF01799,PF00941,PF03450; InterPro: IPR014307; overlaps another CDS with the same product name.
 
     0.581
iorB
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein; COG: COG1529; Pfam: PF02738; InterPro: IPR008274.
  
     0.579
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
  
  
 0.530
EFE96628.1
Hypothetical protein; Pfam: PF08980; InterPro: IPR015073.
  
    0.520
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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