STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96208.1Hypothetical protein; COG: COG3112; Pfam: PF06062; InterPro: IPR008249; Belongs to the UPF0231 family. (143 aa)    
Predicted Functional Partners:
YceB
Hypothetical protein; Pfam: PF07273; InterPro: IPR010835.
  
     0.754
YijD
Hypothetical protein; Pfam: PF07226; InterPro: IPR009867.
  
     0.748
EFE94900.1
Hypothetical protein; COG: COG3140; Pfam: PF03701; InterPro: IPR005371; Belongs to the UPF0181 family.
  
     0.742
EFE96176.1
Hypothetical protein.
  
     0.734
EFE94427.1
Hypothetical protein.
  
     0.729
EFE96731.1
Hypothetical protein; COG: COG3776; Pfam: PF06611; InterPro: IPR009525.
  
     0.710
torD
Cytoplasmic chaperone TorD; COG: COG3381; Pfam: PF06192; InterPro: IPR010395.
  
     0.710
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
     0.698
YfeY_2
Hypothetical protein; Pfam: PF06572; InterPro: IPR010938.
  
     0.698
rof
Modulator of Rho-dependent transcription termination (ROF); COG: COG4568; Pfam: PF07073; InterPro: IPR009778.
  
    0.633
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.