STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96215.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
EFE95974.1
Hypothetical protein.
  
     0.772
EFE96176.1
Hypothetical protein.
  
     0.771
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.770
EFE97088.1
Hypothetical protein; Pfam: PF07305; InterPro: IPR009918.
  
     0.768
EFE97000.1
Hypothetical protein; COG: COG5645; Pfam: PF07119; InterPro: IPR010780.
  
     0.768
ppdA
Prepilin-type cleavage/methylation N-terminal domain protein; COG: COG2165; Pfam: PF07963.
  
   
 0.768
EFE96807.1
Hypothetical protein.
  
     0.767
EFE96999.1
Hypothetical protein; Pfam: PF07676; InterPro: IPR011042.
  
     0.766
EFE94427.1
Hypothetical protein.
  
     0.766
YnfB
Tat pathway signal sequence domain protein; Pfam: PF06932; InterPro: IPR009700; Belongs to the UPF0482 family.
  
     0.764
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.