STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cah-3Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (221 aa)    
Predicted Functional Partners:
cah-2
Carbonate dehydratase; COG: COG0288; Pfam: PF00484; InterPro: IPR001765.
  
  
 
0.916
cah
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
  
 
0.910
sul
Inorganic anion transporter, SulP family; COG: COG0659; Pfam: PF00916; InterPro: IPR011547.
  
 0.787
nirC
Nitrite transporter NirC; COG: COG2116; Pfam: PF01226; InterPro: IPR000292.
  
    0.535
YfdC
Hypothetical protein; COG: COG2116.
  
    0.535
focA
Formate transporter FocA; COG: COG2116; Pfam: PF01226; InterPro: IPR000292.
  
    0.535
yadH
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
       0.527
yadG
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
       0.520
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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