STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadGABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593. (307 aa)    
Predicted Functional Partners:
yadH
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
  
 0.978
bioC
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
  
 0.834
bioH2
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
 
  
 0.565
gshA
Glutamate--cysteine ligase; COG: COG2918; Pfam: PF04262; InterPro: IPR006334; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
  
     0.534
cah-3
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.520
IcaB
Polysaccharide deacetylase; COG: COG0726; Pfam: PF01522; InterPro: IPR002509.
     
 0.488
gor
Glutathione-disulfide reductase; COG: COG1249; Pfam: PF07992,PF00070,PF02852; InterPro: IPR006322.
 
     0.424
oppF2
ABC transporter, ATP-binding protein; COG: COG1124; Pfam: PF00005; InterPro: IPR003593.
 
0.417
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
 
 
 0.404
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.