STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IcaBPolysaccharide deacetylase; COG: COG0726; Pfam: PF01522; InterPro: IPR002509. (426 aa)    
Predicted Functional Partners:
EFE95611.1
Glycosyltransferase family 36; COG: COG3459; Pfam: PF06204,PF06165,PF06205; InterPro: IPR010383.
  
  
 0.630
celA-2
Cellulose synthase catalytic subunit (UDP-forming); Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
  
  
 0.578
cybC
Soluble cytochrome b562; COG: COG3783; Pfam: PF07361; InterPro: IPR009155.
  
     0.536
dinI2
DinI-like family protein; Pfam: PF06183; InterPro: IPR010391.
  
     0.528
EFE93451.1
Outer membrane porin, OprD family; Pfam: PF03573.
  
     0.510
yadH
ABC-2 type transporter; COG: COG0842; Pfam: PF01061; InterPro: IPR013525.
     
 0.499
EFE93492.1
Acyltransferase; COG: COG1835; Pfam: PF01757.
     
 0.489
yadG
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
     
 0.488
cadC
Transcriptional regulatory protein, C-terminal domain protein; COG: COG3710; Pfam: PF00486; InterPro: IPR011991.
  
     0.458
YcdZ
Hypothetical protein; Pfam: PF06496; InterPro: IPR009476.
  
     0.455
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.