STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (126 aa)    
Predicted Functional Partners:
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
 0.999
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.992
gabT
4-aminobutyrate transaminase; COG: COG0160; Pfam: PF00202; InterPro: IPR004632; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.910
gabT-2
4-aminobutyrate transaminase; COG: COG0160; Pfam: PF00202; InterPro: IPR004632; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.910
hpaE
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; COG: COG1012; Pfam: PF00171; InterPro: IPR011985; Belongs to the aldehyde dehydrogenase family.
     
 0.902
feaB-2
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
     
 0.902
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.842
ansA
L-asparaginase, type I; COG: COG0252; Pfam: PF00710; InterPro: IPR006033.
     
 0.834
ansA2
L-asparaginase, type II; COG: COG0252; Pfam: PF00710; InterPro: IPR004550; Belongs to the asparaginase 1 family.
     
 0.834
aspA
Aspartate ammonia-lyase; COG: COG1027; Pfam: PF00206; InterPro: IPR004708.
     
 0.828
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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