STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DgoT_2Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. (415 aa)    
Predicted Functional Partners:
hpaX
4-hydroxyphenylacetate permease; COG: COG0477; Pfam: PF07690; InterPro: IPR012707.
  
    0.714
exuT2
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
    0.705
RhmT_2
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
    0.675
RhmT_4
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
    0.671
RhmT_6
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
    0.665
GlpT_1
Transporter, major facilitator family protein; COG: COG2271; Pfam: PF07690; InterPro: IPR011701.
  
    0.645
exuT
D-galactonate transporter; Pfam: PF07690; InterPro: IPR004744.
  
    0.636
KshA
Rieske [2Fe-2S] domain protein; COG: COG4638; Pfam: PF00355; InterPro: IPR005806.
 
     0.574
HcaD
Pyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070; InterPro: IPR013027.
 
  
 0.518
DbfB
Glyoxalase family protein; Pfam: PF00903; InterPro: IPR004360.
 
     0.481
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.