STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HcaDPyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070; InterPro: IPR013027. (403 aa)    
Predicted Functional Partners:
ndoA
Rieske [2Fe-2S] domain protein; COG: COG2146; Pfam: PF00355; InterPro: IPR005806.
 
 
 0.929
DbfB
Glyoxalase family protein; Pfam: PF00903; InterPro: IPR004360.
 
     0.929
KshA
Rieske [2Fe-2S] domain protein; COG: COG4638; Pfam: PF00355; InterPro: IPR005806.
 
  
 0.912
EFE96092.1
Cytochrome C; Pfam: PF00034; InterPro: IPR009056.
   
 
 0.899
fabG9
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
 
 0.857
nasA
Molybdopterin oxidoreductase; COG: COG0243; Pfam: PF04879,PF00384,PF01568,PF04324; InterPro: IPR006656; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 0.838
oxrA
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
 
 0.799
KdgR_2
IclR helix-turn-helix domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR005471.
 
     0.786
GudP_2
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
 
     0.774
acoC
Hydrolase, alpha/beta domain protein; Pfam: PF00561; InterPro: IPR000073.
 
 
 0.734
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.