STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96254.1Cupin domain protein; Pfam: PF07883; InterPro: IPR013096. (175 aa)    
Predicted Functional Partners:
GudP_2
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
     0.956
oxrA
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
     0.943
nadX
Hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
    0.938
acoC
Hydrolase, alpha/beta domain protein; Pfam: PF00561; InterPro: IPR000073.
 
    0.919
ilvB3
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Pfam: PF02776,PF00205,PF02775; InterPro: IPR012001; Belongs to the TPP enzyme family.
 
     0.903
DbfB
Glyoxalase family protein; Pfam: PF00903; InterPro: IPR004360.
 
    0.875
KshA
Rieske [2Fe-2S] domain protein; COG: COG4638; Pfam: PF00355; InterPro: IPR005806.
 
   
 0.852
hpaE2
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
    0.765
fabG9
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
     0.764
KdgR_2
IclR helix-turn-helix domain protein; COG: COG1414; Pfam: PF09339,PF01614; InterPro: IPR005471.
 
  
 0.761
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.