STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96134.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
MdlY
Amidase; COG: COG0154; Pfam: PF01425; InterPro: IPR000120; Belongs to the amidase family.
 
 
   0.867
EFE96136.1
Hypothetical protein.
 
    0.833
YdfH_2
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
    0.684
yhjE2
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
    0.605
EFE95283.1
Hypothetical protein; COG: COG0730; Pfam: PF01925; InterPro: IPR002781.
  
     0.461
EFE95380.1
Rhodanese-like protein; Pfam: PF00581; InterPro: IPR001763.
  
    0.448
EFE95379.1
Cysteine dioxygenase type I; Pfam: PF05995.
  
     0.443
EFE97623.1
Hypothetical protein; Pfam: PF03928; InterPro: IPR005624.
 
     0.403
EFE94500.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.