STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96136.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
EFE96134.1
Hypothetical protein.
 
    0.833
yhjE2
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
      0.806
MdlY
Amidase; COG: COG0154; Pfam: PF01425; InterPro: IPR000120; Belongs to the amidase family.
 
     0.767
EFE94846.1
Hypothetical protein.
  
    0.704
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.579
YhjH
Cyclic diguanylate phosphodiesterase (EAL) domain protein; Pfam: PF00563.
  
     0.521
YdfH_2
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
 
     0.507
LeuO_2
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
  
     0.506
EFE93607.1
Hypothetical protein.
  
     0.471
EFE95283.1
Hypothetical protein; COG: COG0730; Pfam: PF01925; InterPro: IPR002781.
  
     0.464
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.