STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96060.1Hypothetical protein; Belongs to the UPF0325 family. (129 aa)    
Predicted Functional Partners:
EFE97548.1
Hypothetical protein; Pfam: PF06526; InterPro: IPR009491.
  
   
 0.714
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.666
cyaA
Adenylate cyclase, class I; COG: COG3072; Pfam: PF01295; InterPro: IPR000274; Belongs to the adenylyl cyclase class-1 family.
  
     0.652
hns
DNA-binding protein H-NS; COG: COG2916; Pfam: PF00816; InterPro: IPR001801; Belongs to the histone-like protein H-NS family.
  
    0.647
lpp
Lipoprotein LPP repeat protein; COG: COG4238; Pfam: PF04728.
  
     0.645
EFE98159.1
Hypothetical protein; COG: COG3056; Pfam: PF03923; InterPro: IPR005619.
  
     0.635
wzyE
ECA biosynthesis protein WzyE; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.634
viaA
Putative protein ViaA; COG: COG2425.
  
     0.598
EFE94076.1
Hypothetical protein; COG: COG3150; Pfam: PF05728; InterPro: IPR008886; Belongs to the UPF0227 family.
  
     0.593
LpoB
Hypothetical protein; COG: COG3417.
  
     0.567
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.