STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE96092.1Cytochrome C; Pfam: PF00034; InterPro: IPR009056. (104 aa)    
Predicted Functional Partners:
HcaD
Pyridine nucleotide-disulfide oxidoreductase; COG: COG0446; Pfam: PF07992,PF00070; InterPro: IPR013027.
   
 
 0.899
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.740
ccmI
Cytochrome c-type biogenesis protein CcmI; COG: COG4235; Pfam: PF07719; InterPro: IPR011990.
  
   
 0.556
yjdL
Amino acid/peptide transporter; COG: COG3104; Pfam: PF00854; InterPro: IPR005279.
       0.555
AdhB_2
COG: COG1529; Pfam: PF02738,PF00034; InterPro: IPR008274.
  
  
 0.519
EFE96196.1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
  
 0.506
EFE94373.1
FAD linked oxidase, C-terminal domain protein; COG: COG0277; Pfam: PF01565,PF02913; InterPro: IPR004113.
  
  
 0.494
copC
Copper resistance protein CopC; COG: COG2372; Pfam: PF04234; InterPro: IPR007348.
    
   0.481
AdhB_1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
  
 0.475
EFE94416.1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
  
 0.459
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.