STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NlpEHypothetical protein; COG: COG3015; Pfam: PF04170; InterPro: IPR007298. (227 aa)    
Predicted Functional Partners:
cpxA
Sensor protein CpxA; COG: COG0642; Pfam: PF00672,PF00512,PF02518; InterPro: IPR003594.
     
 0.918
klcA
Antirestriction protein; Pfam: PF03230; InterPro: IPR004914.
  
     0.709
prfB2
peptidyl-tRNA hydrolase domain protein; COG: COG1186; Pfam: PF00472; InterPro: IPR000352.
  
    0.645
YaeQ
YaeQ protein; COG: COG4681; Pfam: PF07152; InterPro: IPR009822.
       0.613
QseG
Hypothetical protein.
  
     0.612
EFE93333.1
Hypothetical protein; Pfam: PF06067; InterPro: IPR009276.
  
     0.564
YaeP
Hypothetical protein; Pfam: PF06786; InterPro: IPR009624; Belongs to the UPF0253 family.
 
     0.511
EFE97087.1
Hypothetical protein; COG: COG3152; Pfam: PF05656; InterPro: IPR008523.
  
     0.507
YcdZ
Hypothetical protein; Pfam: PF06496; InterPro: IPR009476.
  
     0.500
rhaT
Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620.
  
     0.499
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.