STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrBMultidrug resistance protein B; COG: COG0477; Pfam: PF07690; InterPro: IPR004638; Belongs to the major facilitator superfamily. (498 aa)    
Predicted Functional Partners:
emrA
Efflux pump membrane protein; COG: COG1566; Pfam: PF00529; InterPro: IPR005694.
 
 
 0.945
YibH_3
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566; Pfam: PF00529; InterPro: IPR006143.
 
 
 0.854
MdtP
Efflux transporter, outer membrane factor lipoprotein, NodT family; COG: COG1538; Pfam: PF02321; InterPro: IPR010131.
 
  
 0.684
mprA
Transcriptional regulator, MarR family; COG: COG1846; Pfam: PF01047; InterPro: IPR000835.
 
   
 0.620
rlgA
Helix-turn-helix domain of resolvase; COG: COG1961; Pfam: PF00239,PF02796; InterPro: IPR006119.
  
     0.529
aaeA
Efflux transporter, RND family, MFP subunit; Forms an efflux pump with AaeB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.525
emrD
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
  
   
 0.400
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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