STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95980.1Acetyltransferase, GNAT family; COG: COG2388; Pfam: PF00583; InterPro: IPR016181. (92 aa)    
Predicted Functional Partners:
EFE94342.1
NAD dependent epimerase/dehydratase family protein; COG: COG2910; Pfam: PF01370; InterPro: IPR016040.
  
    0.703
sulA
TIGR01777 family protein; COG: COG1090; Pfam: PF01370,PF08338; InterPro: IPR010099.
  
    0.581
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.561
yjbJ
CsbD-like protein; COG: COG3237; Pfam: PF05532; InterPro: IPR008462; Belongs to the UPF0337 (CsbD) family.
  
    0.524
EFE93729.1
Hypothetical protein.
  
    0.524
yqhD
Alcohol dehydrogenase, iron-dependent; COG: COG1979; Pfam: PF00465; InterPro: IPR001670.
   
    0.518
YphA
DoxX family protein; COG: COG2259; Pfam: PF07681,PF02077; InterPro: IPR011637.
  
    0.513
yjdL
Amino acid/peptide transporter; COG: COG3104; Pfam: PF00854; InterPro: IPR005279.
  
  
 0.477
yceE
Amino acid/peptide transporter; COG: COG3104; Pfam: PF00854; InterPro: IPR005279.
  
  
 0.452
EFE94810.1
3-demethylubiquinone-9 3-methyltransferase domain protein; COG: COG3865; Pfam: PF06983; InterPro: IPR009725.
  
    0.426
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.