STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbFPhosphotransferase system, EIIC; COG: COG1263; Pfam: PF00367,PF02378; InterPro: IPR003352. (454 aa)    
Predicted Functional Partners:
crr
Glucose-specific phosphotransferase enzyme IIA component; COG: COG2190; Pfam: PF00358; InterPro: IPR001127.
 
 0.947
EFE95828.1
Hypothetical protein; COG: COG2103; overlaps another CDS with the same product name; 4.2.-.-.
 
  
 0.888
murQ
Putative N-acetylmuramic acid 6-phosphate etherase; COG: COG2103; Pfam: PF01380; overlaps another CDS with the same product name.
 
  
 0.851
yfhB
HAD hydrolase, family IF; COG: COG0560; InterPro: IPR006435.
       0.787
licT
PRD domain protein; COG: COG3711; Pfam: PF03123,PF00874; InterPro: IPR011608.
 
 0.702
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.656
yfhH
Transcriptional regulator, RpiR family; COG: COG1737; Pfam: PF01418,PF01380; InterPro: IPR001347.
 
  
 0.636
cscA
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.533
EFE95826.1
Hypothetical protein; 2.1.-.-.
       0.526
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.505
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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