STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95846.1Transporter, Ni2+-Co2+ transporter (NiCoT) family protein; COG: COG2215; Pfam: PF03824; InterPro: IPR011541; Belongs to the NiCoT transporter (TC 2.A.52) family. (338 aa)    
Predicted Functional Partners:
EFE95845.1
Hypothetical protein; COG: COG3683; Pfam: PF06226; InterPro: IPR010412.
 
   
 0.952
csiE
PRD domain protein; COG: COG3711; Pfam: PF00874; InterPro: IPR011608.
     
 0.574
ArfA_2
Hypothetical protein; COG: COG3036; Pfam: PF03889; InterPro: IPR005589.
  
     0.570
EFE97286.1
Hypothetical protein; Pfam: PF00440.
  
     0.455
EFE93711.1
Hypothetical protein; Pfam: PF06779; InterPro: IPR010645.
  
     0.453
EFE94462.1
Hypothetical protein.
 
   
 0.440
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.424
EFE95872.1
Hypothetical protein.
  
     0.422
YebZ
Copper resistance protein D; COG: COG1276; Pfam: PF05425; InterPro: IPR008457.
  
     0.412
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
     
 0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.