STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJRNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (241 aa)    
Predicted Functional Partners:
lptG
Lipopolysaccharide export system permease protein LptG; COG: COG0795; Pfam: PF03739; InterPro: IPR005495.
  
     0.608
rrmJ
Ribosomal RNA large subunit methyltransferase J; COG: COG0293; Pfam: PF01728; InterPro: IPR002877.
  
   
 0.555
suhB
Inositol monophosphatase family protein; COG: COG0483; Pfam: PF00459; InterPro: IPR000760; Belongs to the inositol monophosphatase superfamily.
       0.551
cysS
cysteine--tRNA ligase; COG: COG0215; Pfam: PF01406,PF09190; InterPro: IPR002308; Belongs to the class-I aminoacyl-tRNA synthetase family.
      0.473
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
  
 0.468
iscR
Putative iron-sulfur cluster assembly transcription factor IscR; COG: COG1959; Pfam: PF02082; InterPro: IPR000944.
       0.459
pncA2
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
 
      0.429
gspO
Type 4 prepilin-like protein leader peptide-processing enzyme domain protein; Pfam: PF01478; InterPro: IPR000045; Belongs to the peptidase A24 family.
  
     0.416
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
   
 0.411
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.