STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YfgJHypothetical protein; Pfam: PF07191; InterPro: IPR010807. (74 aa)    
Predicted Functional Partners:
EFE95870.1
Transporter, auxin efflux carrier (AEC) family protein; COG: COG0679; Pfam: PF03547; InterPro: IPR004776.
       0.759
MliC
Putative Membrane-bound lysozyme inhibitor of C-type lysozyme; COG: COG3895.
  
     0.730
YciN
Hypothetical protein.
  
     0.666
EFE94076.1
Hypothetical protein; COG: COG3150; Pfam: PF05728; InterPro: IPR008886; Belongs to the UPF0227 family.
  
     0.660
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
     
 0.619
EFE93700.1
Hypothetical protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
  
     0.615
EFE94334.1
Fusaric acid resistance protein conserved region; COG: COG1289; Pfam: PF04632; InterPro: IPR006726.
  
     0.609
rfaL
O-antigen ligase; Pfam: PF04932.
  
     0.599
EFE97548.1
Hypothetical protein; Pfam: PF06526; InterPro: IPR009491.
  
     0.580
YiiS
Hypothetical protein; COG: COG3691; Pfam: PF04175; InterPro: IPR005272.
  
     0.565
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.