STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtThermolysin metallopeptidase, catalytic domain protein; Extracellular zinc metalloprotease. (342 aa)    
Predicted Functional Partners:
EFE95872.1
Hypothetical protein.
 
     0.891
chiC
Chitinase C1; COG: COG3469; Pfam: PF00704,PF00041,PF02839; InterPro: IPR001223; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.618
purR2
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532.
       0.596
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
 
  
 0.465
GbpA_1
Chitin binding domain protein; COG: COG3397; Pfam: PF03067; InterPro: IPR004302.
   
  
 0.444
chb
Chitin binding domain protein; COG: COG3397; Pfam: PF03067; InterPro: IPR004302.
   
  
 0.444
phaG
(R)-3-hydroxydecanoyl-ACP:CoA transacylase family protein.
  
  
 0.427
efeU
FTR1 family protein; COG: COG0672; Pfam: PF03239; InterPro: IPR004923.
  
     0.422
EFE94760.1
Trypsin; COG: COG3591; Pfam: PF00089.
  
  
 0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.