STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exuT2Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. (435 aa)    
Predicted Functional Partners:
YicI_1
Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family.
 
     0.811
DgoT_2
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
    0.705
RhmT_4
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
    0.604
hpaX
4-hydroxyphenylacetate permease; COG: COG0477; Pfam: PF07690; InterPro: IPR012707.
  
    0.557
purR2
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532.
 
     0.516
EFE95872.1
Hypothetical protein.
 
    0.483
uxuR
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
   
 0.402
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.