STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YicI_1Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family. (787 aa)    
Predicted Functional Partners:
bglX
Glycosyl hydrolase family 3 C-terminal domain protein; COG: COG1472; Pfam: PF00933,PF01915; InterPro: IPR002772; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.930
malQ
4-alpha-glucanotransferase; COG: COG1640; Pfam: PF02446; InterPro: IPR003385.
    
 0.919
melA2
Alpha-galactosidase; Pfam: PF02065; InterPro: IPR013785.
    
 0.914
ascB
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
  
 0.913
bglH
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
  
 0.913
celH
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
  
 0.913
bgl
Glycosyl hydrolase, family 1; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
  
 0.913
lacG
Beta-galactosidase; COG: COG2723; Pfam: PF00232; InterPro: IPR001360; Belongs to the glycosyl hydrolase 1 family.
  
 0.913
mak
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
  
 
 0.912
malZ
Alpha amylase, catalytic domain protein; COG: COG0366; Pfam: PF00128; InterPro: IPR013781; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.908
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.