STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylA2Putative xylose isomerase; COG: COG2115. (101 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; COG: COG1070; Pfam: PF00370,PF02782; InterPro: IPR006000.
 
  
 0.770
xylF
D-xylose ABC transporter, D-xylose-binding protein; COG: COG4213; Pfam: PF00532; InterPro: IPR013456.
 
  
 0.760
xylR
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
 
   
 0.703
xynB
Glycosyl hydrolase, family 43; COG: COG3507; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.546
iolE
AP endonuclease, family 2; COG: COG1082; Pfam: PF01261,PF07582; InterPro: IPR013022.
 
   
 0.511
Gfo_1
Oxidoreductase, NAD-binding domain protein; COG: COG0673; Pfam: PF01408,PF02894; InterPro: IPR016040.
 
  
 0.460
yjjM
FCD domain protein; COG: COG1802; Pfam: PF00392,PF07729.
 
     0.421
xylH
Branched-chain amino acid ABC transporter, permease protein; COG: COG4214; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.419
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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