STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UidB_1Hypothetical protein; COG: COG2211. (246 aa)    
Predicted Functional Partners:
EFE95881.1
Hypothetical protein; COG: COG2211.
     0.993
xynB
Glycosyl hydrolase, family 43; COG: COG3507; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.909
gph-2
Glycoside/pentoside/hexuronide transporter; COG: COG2211; InterPro: IPR001927.
  
     0.729
MelB
Hypothetical protein; COG: COG2211.
  
     0.713
yicJ2
Transporter, major facilitator family protein; COG: COG2211; Pfam: PF07690; InterPro: IPR001927.
  
     0.690
UidB_2
Hypothetical protein; Pfam: PF07690.
  
     0.651
ywbF
oligosaccharide:H+ symporter; Pfam: PF01306; InterPro: IPR000576.
  
    0.636
rafB
oligosaccharide:H+ symporter; Pfam: PF01306; InterPro: IPR000576.
  
    0.568
LacY_2
oligosaccharide:H+ symporter; Pfam: PF01306; InterPro: IPR000576.
  
    0.542
abf
Glycosyl hydrolase, family 43; COG: COG3940; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.498
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.