STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynBGlycosyl hydrolase, family 43; COG: COG3507; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family. (559 aa)    
Predicted Functional Partners:
UidB_1
Hypothetical protein; COG: COG2211.
 
  
 0.909
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.897
EFE95881.1
Hypothetical protein; COG: COG2211.
 
  
 0.880
uxaC
Glucuronate isomerase; COG: COG1904; Pfam: PF02614; InterPro: IPR003766.
 
  
 0.858
abf
Glycosyl hydrolase, family 43; COG: COG3940; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.754
YicI_2
Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.737
EFE95430.1
Hypothetical protein; COG: COG4289.
 
     0.684
xylA
Xylose isomerase; COG: COG2115; Pfam: PF01261; InterPro: IPR013022; Belongs to the xylose isomerase family.
 
  
 0.622
EFE95884.1
Hypothetical protein; 2.7.1.69.
       0.608
xylA2
Putative xylose isomerase; COG: COG2115.
 
  
 0.546
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.